PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_012037150.1 NCBI__GCF_000063445.1:WP_012037150.1 (337 amino acids)

SeqID: WP_012037150.1 NCBI__GCF_000063445.1:WP_012037150.1
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 3183270: Inner membrane ABC transporter permease protein yddR]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_012037150.1 NCBI__GCF_000063445.1:WP_012037150.1
MKLRDYVIRRLLLLIPVLIGITFITFTLSHMIGDPAAAWVTDKTTEQRRAIIIQQHHLDE
PLPIQYLYYINDLVHLDLGNSASEGGRSVAECLAQYFPATLELTVASMILCLAIGIPLGI
ISAIKKDKLPDHAVRLFSLMGVSVPIFWFGLILQYIFYLQLDLLPLGGRLPLTMSAPPHV
TGLYLIDSLLAGQINTFWVALVHLLMPAFCLSFTYLAIISRMMRSSMLETMTQDFIRTAR
AKGLSEKAVIFKHALRNALTPTTTVAGLAFGGLLSGAVLTETIFMWPGIGRYSVRAISST
DFASIMGFTLLVVVIYVFTNLIVDILYAYLDPRVKFG