PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_012101348.1 NCBI__GCF_000016505.1:WP_012101348.1 (801 amino acids)

SeqID: WP_012101348.1 NCBI__GCF_000016505.1:WP_012101348.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597040: methionine synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_012101348.1 NCBI__GCF_000016505.1:WP_012101348.1
MNFKNLVDKFNNRFIFFDGAMGTMLQKAGLKLGELPEVLNITNPEIISGIHRKYLDAGAD
IITTNTFGANELKYDSSDYTIEDVISAGVKLAKQEAGDKLVALDIGPIGKIMEPTGNLSF
ESAYKLFKNQIVIGEKSGADVVLIETMTDLYEAKAAVLAAKENSNIPIFCTMTFQEDGRT
LMGTDAKTMVFVLEALGVDVLGVNCSLGPKELQGIVEEILKYSSIPVMVQPNAGLPRYDG
ENTIYDISPEDFAENVLTMAQKGIRVLGGCCGTTPEFIRMCRKDLEGLTPLNIEEKHYTA
VCSATDTVIVGEKIKIIGERINPTGRSIYKKELKEGSINYIQKEAIMQKEEGANILGVNV
GLPEINEVEIMKKAIRAVQKVVQLPLSIDSPDPQVLETGIRMYNGKPVINSVNGSKKSME
EVFPIVKKYGGCVIALTIDEKGIPHTAEGRVKIAEKIIKTASIYGINKKNIIIDCLTLTV
SAQQKEVLETIKAIKMVTEKFGVKTVLGVSNISFGLPNRSILNRTFLAMALQAGLNLPIM
NPADESMKEVIAAFQVLTNIDKEGKEYVIKYGNKSKDEKPKGEGNSPLKNADNNLKDLKQ
LIIDGIEDEAEAMTTELLKNKKALEIVNSYIIPALDEVGKQYELQDIFLPQLIQSAETVK
KSFEIIKDNMLSSGQKSLEKGTIVLATVKGDIHDIGKNIVKVLLENYGFEVIDLGRDVDI
DNIVNTIRDNNIKLVGLSALMTTTVASMKKTIEAIRENNLNCKIVVGGAVLNQNYADMIG
ADYYAKDAREAVKIAEEVFLI

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory