PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_012170593.1 NCBI__GCF_000010525.1:WP_012170593.1 (417 amino acids)

SeqID: WP_012170593.1 NCBI__GCF_000010525.1:WP_012170593.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 62288063: D-amino acid dehydrogenase small subunit]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_012170593.1 NCBI__GCF_000010525.1:WP_012170593.1
MRIIVLGAGVIGVTSAYFLAKAGHEVTVLDRQAGPALETSYANAGEVSPGYSSPWAAPGI
PMKAAKWLFMKHAPLIVRPTLDPVTWRWMLQMLANCTSARYAVNKGRMVRIAEYSRDVLM
QLRADTGIRYDERMQGTLEVFRSQKQLDGIAKDIAVLKADGVPFEVLDREGCVQVEPGLK
PAAHKIVGGLRLPGDETGDCFLFTNALAKLAEGLGVRFVYNVDLKRLRRDGDRIAAVETA
QGDYIADSYVAALGSYMPGFLAPLGLDLPIYPVKGYSITVPILDEAKAPVSTVMDEYYKI
AITRLGSRIRVGGMAEIARFNKDLPPARQATLTLSVEDLFGGAGDQKKAEFWCGLRPMTP
DGTPIIGKTKFGNLFLNGGHGTLGWTMSCGSARLLSDIISGAKPEISTEGLDLSRYR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory