PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_012173167.1 NCBI__GCF_000010525.1:WP_012173167.1 (564 amino acids)

SeqID: WP_012173167.1 NCBI__GCF_000010525.1:WP_012173167.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 45593149: Crotonobetainyl-CoA dehydrogenase (Crotonobetainyl-CoA reductase)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_012173167.1 NCBI__GCF_000010525.1:WP_012173167.1
MPSRLALRSASESGADVVDLVRSALPALERALTDATQAVREKVSSGGKLSAELLESEQRA
VHGLAWLATYVFGVRELLHYADRLGASGKFGEAERLIVQIGAGEYIAQILGGIAMSQGET
VRLVDLYLSEDAVSALRHNAAVGALAQHGNTAEARAALAAIIRNAHGAFTVGDAGLDETL
EAMRSEIRRFVEAEVVPHAHEWHLKNAYIPLEVIGRLAELGVFGLTIPEEYGGLGLPKEA
MCVVTEELSRGYIGVGSLGTRSEIAAELIIGGGTDEQKAHYLPKLASGEILPTAVFTEPN
TGSDLASLRTRAVKEGDVYKVSGNKTWITHPVRADLMTLLVRTNPAEPGYKGLSMLLAEK
PRGTDEDPFPAKGMTGGEIEVLGYRGMKEFEIGFDGFEVPAGQLLGGVEGQGFKQLMNTF
EAARIQTAARAVGVAQAAMETGLRYAEERIQFGKPLIAFPRVADKIVMMAVEIAIARQIT
YFAARAKDEGRRTDLEAGMSKLLGARVAWAAADNALQIHGGNGFALEYQVSRLLCDARIL
NIFEGAAEIQAQVIARRLLEEGRN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory