PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_012383064.1 NCBI__GCF_000019845.1:WP_012383064.1 (530 amino acids)

SeqID: WP_012383064.1 NCBI__GCF_000019845.1:WP_012383064.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 61217911: Isocitrate lyase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_012383064.1 NCBI__GCF_000019845.1:WP_012383064.1
MSYQDQITEVSQLIKSKNGTWDGINAEAVVRMRLQNRFKTGLDIAKYTAAIMRRDMAAYD
ADTTKYTQSLGCWHGFIGQQKVISIKKHFGTTERRYLYLSGWMVAALRSEFGPLPDQSMH
EKTSVPALIEELYTFLRQADARELNDIFRAIDAARKAGDSAKAKELLTQAENHQTHVIPI
IADIDAGFGNAEATYLLAKKMIEAGAGALQIENQVSDEKQCGHQDGKVTVPHEDFLAKVR
ACRYAFLELGVDDGIVVTRTDSLGAGLTKQIAVSHKPGDLGDQYNSFLDVEEVPAGGGAN
GDVIINRDGKLFRPKRLPSNLFQFRKGTGEDRCVLDSITSLQNGADLLWIETEKPHVEQI
AGMMDRIRAVIPNAKLVYNNSPSFNWTINFRQQVYDAWKEAGKDVSAYDRAGLMDVKYDG
SDLAAEADEKIRTFQADASKRAGIFHHLITLPTYHTAALSTDNLAKEYFGEQGMLGYVLN
VQRQEIRQKIACAKHQNMAGSDIGDDHKEYFAGEAALKAGGADNTMNQFG