PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_012634397.1 NCBI__GCF_000022085.1:WP_012634397.1 (753 amino acids)

SeqID: WP_012634397.1 NCBI__GCF_000022085.1:WP_012634397.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1172701: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_012634397.1 NCBI__GCF_000022085.1:WP_012634397.1
MPAAPGGPRLLLRRLREAMAEPVSAQARLDRIVVIIAANMVAEVCSVYVLRDDGMLELFA
TEGLNREAVHLTTMRAGEGLVGLIAASAEPLSLSDAQSHPAFSYRPETGEEIYHAFLGVP
LLRAGNTMGVLVVQNRTYRVYSEEEIEALQTTAMVLAEMIASGDLQALSPGTVNATRRSL
SQSGVALAEGVGLGHVVLHEPRIVVKNLIAENVEREVGRLETAIAEVRSAIDDLVERGDV
AGAGEHREVLETVRMFAHDQGWLRRMREAVLSGLTAEAAVERVQSDNRARMLRQSDPYLR
ERLHDLDDLANRLLRQLVGAQGMIPGTMPENAILVARSMGPAALLDYDRARLRGVVLEEG
GPTSHIAIVARALGIPAVGEVANATALVESGDAIIVDGGAGEVQIRPGPEVEAAYAEKAR
LRARRQEQYRALRDLPSVTRDGVGIALQLNAGLLVDLSHLNETGAEGVGLFRTELQFMVA
ERMPSAAEQQSLYEAVFAAAGDLPVTIRTLDIGGDKILPYMKALEEENPALGWRAIRIGL
DRPGLLRMQLRALLKAAGGRPLKIMFPMVATVDEFIRAKAIVDREKAHLARHGRPLPSDC
RLGVMVEVPSLLFQMDEIAAAADFLSVGSNDLMQFLFAVDRENRQVANRFDPLCAAALRA
FGLIAERAQAAGTPVTVCGEIGGRPLEAMALIGLGYRALSMSPASIGPVKAMVLSLDAAK
IGAFLRDELAKTSDGASLRPALAAYAEAHGIPV