PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_012676652.1 NCBI__GCF_000021565.1:WP_012676652.1 (768 amino acids)

SeqID: WP_012676652.1 NCBI__GCF_000021565.1:WP_012676652.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_012676652.1 NCBI__GCF_000021565.1:WP_012676652.1
MGIKTTAFGFPKIGKNRELKKYVEGYWKGEINKDEMYRGLEKVNEERFEFLKKGDLDLVP
SNDFSVYDFILDISTMIDIIPDRFRNIQDDTDRYFAMARGSESAIACEMTKWFDTNYHYI
VPELTGNFRLIKNRPLDSYRWAKERGIETKPVIVGPFTYVYLGKVYERQEGSLLMNMIRS
YDSEKFRPMVLSLAKVYNEILKELQSEGVKAVQLDEPALVLDITDQDVDTLLEAYRILTD
GIDKTEIHLHTYYESLDNFEKIVFSLPVTGIGLDFVVNDENLENLKRYGFPDDKKLIAGV
ISGRDPWKTDYRKVLDQLETIGRHVSEDRLIISNGSPLFHLPVTIESEKGFLDENLLKML
SFASERIDELRILKEIINEGKEVPDQNIEEIRSIFINEDVKRSVKEIESIEIRRKDDFRE
RYRSQMELLGLPKFPTTTIGSFPQTKEVRQVRAKFRRGEITEAEYESFIKDQIKKAVEIQ
EEIGLDVFVHGEFERTDMVEFFGEKMEGFAFTKNGWVQSYGTRCVRPPIIYGDVSRPESM
TVKEIVYAQSLTNKPVKGMLTGPVTILNWSFYRKDIPKKEIAFQIALALKEEVLDLEKAG
IKIIQIDEPAFREGLPLKKRKQEDYLRWAVKAFRLTNHTVKKTTQIHTHMCYSEFNEIIE
WIYQMDADVISIEASRSKGEIIQAFEDFNYDHGIGIGLYDIHSPRIPSVEEMLEIAERTV
KVTDKNLIWINPDCGLKTRDWKETIPALKNMVKVAQILRDKYGKELEL