PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_012709577.1 NCBI__GCF_000018545.1:WP_012709577.1 (518 amino acids)

SeqID: WP_012709577.1 NCBI__GCF_000018545.1:WP_012709577.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 2499313: NADH-quinone oxidoreductase subunit 1 (NADH dehydrogenase I chain 1) (NDH-1 subunit 1)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Periplasmic            0.01
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane (This protein may have multiple localization sites.) 9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

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Predict transmembrane helices and signal peptides: Phobius

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Input

>WP_012709577.1 NCBI__GCF_000018545.1:WP_012709577.1
MTVKIYVPRDAAAIALGAEKVATAMAEAIAARGLDAAIIRNGSRGMHWLEPLVEVETAAG
RIAYGPVKARDVATLLEAGLLSGAAHPLCLGKTEEIPFLKNQTRLTFARCGVTDPLSLDD
YRGHGGLRGLEKAVSMAPAAIVAEVTESGLRGRGGAGFPTGIKWKTVLEAQGAQKYIVCN
ADEGDSGTFADRMIMEGDPFVLIEGMAIAGIATGATKGYVYTRSEYPHAIAAMSAAIEIA
RAAGVLGTSVLGSAHAFDMEVRTGAGAYVCGEETSLLNSLEGKRGLVRAKPPLPAHKGLF
DCPTVINNVISLASVPVIMDKGAAYYRDFGMGRSRGTIPIQIAGNVKHGGLYETAFGLTL
GEIVDKIGGGTASGRPVKAVQVGGPLGAYFPRSLFDTPFDYEAFAAKDGLIGHAGLVVFD
DTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVEVADRIAAGIEPEKNRELLADLCNT
MKFGSLCALGGFTPYPVTSAMTHFPEDFSPAPVVEAAE