PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_013010175.1 NCBI__GCF_000025725.1:WP_013010175.1 (1116 amino acids)

SeqID: WP_013010175.1 NCBI__GCF_000025725.1:WP_013010175.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597040: methionine synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_013010175.1 NCBI__GCF_000025725.1:WP_013010175.1
MFNEFAKNRIILFDGAMGTSIQNYEITDEIWQGYNGCSEWLNVAAPEIIQQIHEQYFEAG
ADVVETNTFGGTELVMSEYDLQDRTYELNLLGAQIARRAADKYGKYTAGSIGPGTKLPSL
GQISYDDLYTMYHSQAEALLEGGVDLFIIETCQDLLQIKSALNAVIDVKAEKNSDAPVMV
SITVEQNGTMLMGTDISAAVTLLREYPVFSLGLNCSTGPDLMHNPINDLAQNFNGRISCI
PNAGLPENRGGQMVYDMTPDKMAKIVEGMVQEFPIGVLGGCCGTTPEHIKALRPIADKYK
PNKPQAKEYTGESSSLYVSTTLMQTPPPALIGERANANGSKAFRELLLAEDFDGMLAVAK
EQEETGAHFIDACVAYAGRDEKADMAKFMHLLNKTLTAPVVIDSTEPDVVETALKSCAGK
PVINSINFEDGGEKLHIILRAVKKHPASVIALTIDEDGMAMTAEKKFEIAERIYNIFTKE
YGLNPNDLIFDPLTFSIGSGDKTLVDAAIQTNKAIKMIKEKLTGAKTALGLSNISFGLSK
DSRPILNSVFLHEAVEHGLDMAIVHASKVMPQAAIPEEDIKVSKDLLAGQEGALSAFIEH
FSKKEGIVQQEEKTDLPPDEMLKNLIKKGRKAGLEETLTALMQTMKPIEIINNIMLDTMK
EIGELFGAGKMLLPFVLQSAETMKTAVTVLEPFMEKSDTETRGRIVLATVKGDVHDIGKN
LVDIILSNNGYEVYNLGIKVSVEEMIAKAVEMDADAIGMSGLLVKSTNIMRENIAEINRQ
GLSKKVLLGGAALTEKFVKNDCMPIMPGMVSYCRDAFDALKVLSGESEGSIAPEKTYADI
SAKPKKVQSPKLETPPAPPFFGVKTAENYTADDILEYMNKLALFSHRWGYSKKNMPDYEY
EELLTKTVIPEFNETVQEIKDKELLEMGIRYAYFPCNSDGEELIVYNEDGSELTRFVFPR
QNLENGVCLADYFHPVSSGVKDVVAFHIVTAGSKPAEYCQQLFKNNEYKKYYQFHGFFTE
FAEAMAEYAHKMIRTDLKIDHADAKTAHGIISLGYSGRRYSFGYPSCPDLAQNNQLDSIL
DFSQIGVSITENHEMVSEYTTCAIIIHNSSAEYFTT