PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_013429333.1 NCBI__GCF_000166775.1:WP_013429333.1 (514 amino acids)

SeqID: WP_013429333.1 NCBI__GCF_000166775.1:WP_013429333.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 113773: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    OuterMembrane          0.14
    Extracellular          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_013429333.1 NCBI__GCF_000166775.1:WP_013429333.1
MKRILRYILIFAIVFLIGLSSFLAGLSNSQSPVQTKKDGLIFYEVFVRSFYDSNGDGIGD
INGLAEKLPYIKSLGVNAIWLMPIFESPSYHGYDVTNYYKVNPDYGTNEDFVNFIKKAHK
MGIKVIIDMMINHTSSKHPWFIEASSNKNSKYRNYYIWATPNTNLDEPSELGTRQWYKKG
DSYYNAIFWSEMPDLNFDNKAVREEMKKIAKFWLEKGVDGFRLDAAKHIYPLSREKDTLV
WWEEYAKFCRSIKKDVYLVAEVWDSLQRIAQYAKIFDSCFNFIIAQNIIEGVIYENTQTL
QNNLSSIYNLYKNVNPQFVDAPFLTNHDMNRAYTEIGSNSKMKLAAALLLTLPGNPFIYY
GEEIGMKGQKPDEYIREPFKWYETWKKGQTNWEMSLYNSGPDVASVEKQEKDKNSLLNFY
RDMISFRKKNLPLLKGDFQLIKTSFDILSFARVYNNQKMVVIFNFTGKELSKTINLPSNI
NITGKTVKGSGKILSLKNGKLSFSIKPYSFIIIN