PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_013451188.1 NCBI__GCF_000183405.1:WP_013451188.1 (877 amino acids)

SeqID: WP_013451188.1 NCBI__GCF_000183405.1:WP_013451188.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2506131: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_013451188.1 NCBI__GCF_000183405.1:WP_013451188.1
MDKEKYLSSFEFEEREYFFYDINKLSKDGFDIKKLPYSIKILVENILRNLGDGQVNEKDL
KNIAGWSRKQPIPIEIPYKPVRVLMQDFTGVPAVVDLAAMRDAMLELGKNPEKINPLVPV
DLIVDHSVQVDYYGTEDSILKNVALEYKRNEERYKLLKWAQKSFHNFRVVPPNSGICHQV
NLEYLAKVVCIDDRKDKKLLYLDTCIGTDSHTPMVNGIGVMGWGVGGIEAEAVMLGQPYY
MPIPEVIGVKLIGELNEGVTATDLILTITEKLRRYGVVDKFVEYFGPGVKTLSIPDRATI
SNMTPEFGATLGIFPIDRKTIEYLRMTNRDRYADILEIYAKKAGIFYTGQEKVEYTDVLE
IDLNSIEPSIAGPSRPQDRISLSQVKSNLQNLKTDNFVDIEIDQNPVRIKDGSVVIAAIT
SCTNTSNPFVIIGAGLMARNAVKKGLRVKPYVKTSFAPGSKVVESYLKKSGLMPYLEALG
FHITAYGCTTCIGNSGPVLPQIEEAIIKNNLNVAAVLSGNRNFEARIHQLVRSNFLASPM
LVVAYALAGKIDIDFKNEPLGYTPYGEKVMLKDLWPSSEEIHEIISDTFTKSDFKRDYGK
IFDGDLFWQKMNVKVDKTYHWHEKSTYIKKPPYFDNFMKEPGKIFDITNARILLLLGDSI
TTDHISPAGEIDPDYPAGKYLISKGVKEDDFNSYGSRRGNHEVMIRGTFGNIRIKNKMVN
REGSFTVKYPENEEMFIFDAAMKYQMENTPLVVFAGKEYGTGSSRDWAAKGTSLLGIKAV
IAESFERIHKSNLVGMGILPLQFKEGESWAKYEIKGDEVVSIFGLENLSPRKDIRIELSK
PDGEKREFFVTLRLDTEVEVEYYANGGILPYVLRRFL