PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_013460045.1 NCBI__GCF_000183725.1:WP_013460045.1 (869 amino acids)

SeqID: WP_013460045.1 NCBI__GCF_000183725.1:WP_013460045.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596984: aconitate hydratase 2[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_013460045.1 NCBI__GCF_000183725.1:WP_013460045.1
MAFMDEYKAHVAEREAQGIPPLPLTKEQVTALVELITAESSKNAELVEMLAERVNPGVDD
GAHVKAAFLHQVVQGQVKAFLADNSDINSDDHKKAAIKILGKMVGGYNVKPLIDALSNDA
IANEAAHELKHTLLVYDAFNDIVDLSQTNKYAKEVLQSWADAEWFTAKKPLAEKFSVVVF
KFPGETNTDDLSPASAAFTRSDIPLHATTMLSAKMPEGIAKIAELKKMGKQIAYVGDVVG
TGSSRKSAANSVQWHMGDDIPGIPNKRTGGVVIGSIIAPIFFATCEDSGALPIEADVSQM
ETGDVLDIDTKAGTITKNGTQIATFSLRPNTIEDEVRAGGRIPLIIGRGLTAKARAALGM
APATIFATPIQPADTGKGYTLAQKMVGKACGMEGVRPGMYCEPMTSTVGSQDTTGPMTRD
EIKELSALGFSADFVLQSFCHTAAYPKPSDVKLHATLPAFISSRSGVALRPADGVIHSWL
NRMVLPDTVGTGGDSHTRFPIGVSFPAGSGLVAFAAVTGSMPLEMPESVLVRFKGEMQPG
ITLRDLVNAIPYYAIKQGLLTVEKKGKKNIFNGRVLEIEGLPNMKVEQAFELSDASAERS
AAACTVRLNKEPVIEYLKSNVTLIEAMIKDGYEDARTLQRRADKMKEWLAAPSLMEPDAD
AEYAAIIEIDLNEVKEPILACPNDPDNVKLLSEVAGEKIDEVFLGSCMTNIGHYRAAGEV
MRGEGKIAVEKFWIVPPTRMDEQQLINEGYYDVYKAIAAQTEVPGCSLCMGNQASSREGS
TVFSTSTRNFDNRLGKGTQVYLGSAELAAVCAKLGRIPTVAEYMSIVPEKLAGKADDVYK
YLNFNEIASYSLQARNVAEEKYGVTIKAV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory