PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_015888272.1 NCBI__GCF_000018545.1:WP_015888272.1 (737 amino acids)

SeqID: WP_015888272.1 NCBI__GCF_000018545.1:WP_015888272.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.97
    Extracellular          0.01
    Periplasmic            0.01
    OuterMembrane          0.01
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_015888272.1 NCBI__GCF_000018545.1:WP_015888272.1
MLPKLMQSLALPAARVEASRRQFLIGALATGTGLAIGFRLLSASPAAASETPEAGAHAFS
PYVTIDGDGKVTVLSSQFEMGQGSYNGIATLVAEELDADWSTIDVTGAAGNLPAYGNIAF
GGAMQGTGGSTSMVTSWERYRKAGAAARAMLVAAAASEWNVEAAEITVEKGVLSHPSGKS
GGFGDFAARAATLPVPAEVKLKQPNDWKLIGNPELKRFDSARKANGTEQYTIDVKLPGML
TAVMIHPPLFGAKAKSFDASAARAVKDVVDVVETPRGIAVVGEHMWAAIKGREAVTVEWD
EAGAEKRGTQQILSMYRDLVKKPPAAVARKDGDAEAEFAKAAKVIEASFEFPYLAHAAME
PLNAVARMNDDGTLEIWGGHQFTDVYQKLAGDVAGVAPEKVRLHVMKTGGSFGRRAVFDG
DVVVEAVHVAKAIGFRAPVKLQWTREDDMRGGRYRPAYVHSLKAGIDDGGKLVAWTDHIV
GQSIVANTAFEGMVKNGVDPTSVEGASNLPYAIPNQAVGLTSTEVGVPVLWWRSVGSTHT
AFAAETFLDEVAEAAGRDPVEFRLSMLEPDSRHATVLKLAAEKAGWQKPLPEGRFRGVAL
AESFGSVVAEIAEVSTDGNGQIKVERVVAAVDCGLAVNPDQVRAQVEGGIGFGLSAILGE
EISLTDGQVDQGNFDLYTPLRIDAMPAVEVHIVASANPPSGIGEPGVPPIGPAVANAAYK
ALGNRIRVMPFAKSLNA