PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_017177971.1 NCBI__GCF_000295095.1:WP_017177971.1 (303 amino acids)

SeqID: WP_017177971.1 NCBI__GCF_000295095.1:WP_017177971.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [3 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 132127: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    8.47
    Cytoplasmic            1.38
    Periplasmic            0.13
    Extracellular          0.01
    OuterMembrane          0.01
  Final Prediction:
    CytoplasmicMembrane    8.47

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

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Predict transmembrane helices and signal peptides: Phobius

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Find homologs in the ENIGMA genome browser

Input

>WP_017177971.1 NCBI__GCF_000295095.1:WP_017177971.1
MGRVIVVGSINQDITVTVERFPEPGETLSGTSTSYRLGGKGANQAAAAAHGGAEALFVGC
VGGDASGITLREELRGHGVDVGALRTDEEITTGIAFITVSAAGENTIILDAGANARVTGS
HAAEAIGLEAGDVVVLQGEIPAATNEEIIDWTHRAGARVVLNLAPVYAIAPQVLDSVDVL
VVNETECGLVLGSPAPGTPEEALASAAALRERGIASVLVTLGAAGAVWACAEGSGHLPAL
DLGPVVDTTGAGDASVGVLAAALAAGHDFASAVAEGMRAGSTAVLAAGAAASYAAIAPVT
PAP