Running PSORTb v3.0 on WP_017549877.1 NCBI__GCF_000330705.1:WP_017549877.1 (382 amino acids)
SeqID: WP_017549877.1 NCBI__GCF_000330705.1:WP_017549877.1 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Cytoplasmic [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Unknown [No matches against database] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: Cytoplasmic 8.96 CytoplasmicMembrane 0.51 Extracellular 0.26 Periplasmic 0.26 OuterMembrane 0.01 Final Prediction: Cytoplasmic 8.96 -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in the ENIGMA genome browser
>WP_017549877.1 NCBI__GCF_000330705.1:WP_017549877.1 MKIKSYELFTVPPRWLFLKVETDAGLVGWGEPVIEGKAATVKAAVIEMMETLIGRDPLEI EGIWNELYRSGFYRGGPILMSAISGIDQALWDIKGKYYGAPVHELLGGRARDSIKVYSWV GGDRPADVGEASLELKNQGITAVKMNATEELQYIDSYSKVDMVLERVDSIRRSCGTDFGI GIDFHGRVHKPMAKVLARELEQFRPMFIEEPALPENNENLRDIAMHTAIPIATGERMFSK WQFKTLLQDGYADIIQPDLSHAGGITECKKIMSMAEAFDVAAAPHCPLGPIALASCLQVD ATCHNAIIQEQSLGIHYNKGNDILDYIKDASVFEYTDGHVKIPDGPGLGIEINEDYVRER SHIGHNWKNPVWRHADGSIAEW
Lawrence Berkeley National Laboratory