PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_017558097.1 NCBI__GCF_000341205.1:WP_017558097.1 (572 amino acids)

SeqID: WP_017558097.1 NCBI__GCF_000341205.1:WP_017558097.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 19858756: Alpha-glycerophosphate oxidase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_017558097.1 NCBI__GCF_000341205.1:WP_017558097.1
MAATTRMGPEERAEGLARMGTGELDVLVVGGGIVGAGTALDAVARGLKVGLIEARDFASG
TSSRSSKLIHGGLRYLEQLDFELVREALTERGLLLHRIAPHLVRPVPFVFPFSHHWERPY
IGAGVALYDTLSLTMGTSRGLPHHRHLTRSGALRVFPALRRDALVGAVQYWDAQVDDARY
VLTVLRTAAGLGAHVASRVQATSFLREGEHVTGARATDLETGQELEIRAKQVVNAAGVWT
DDIQEMVGGRGQIHVRASKGIHLVVPRDRVQASSGLILRTEKSVLFVIPWGRHWIVGTTD
TSWDLDKAHPAASRRDIDYLLDEVNRVLRVPLTRDDVEGVYAGLRPLLSGESDETSKLSR
EHTVAHPVPGLVLIAGGKYTTYRVMAQDAVDAVAHGLDGRIPDSVTDRLPLAGADGFAAL
WNQRRSLARDAGLHPSRVAHLLRRYGSLVHEVLALMKEDPDLKEPLAGADDYLRAEVVYA
VRNEGARHLDDVLARRTRAAIETWDRGIAAAPEAAALMAGPLGWSSEQVEREVEYYRKRI
EAERAAQEQDTDQEADAAQHGAPEVVPEDLAT

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory