PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_017598314.1 NCBI__GCF_000341125.1:WP_017598314.1 (904 amino acids)

SeqID: WP_017598314.1 NCBI__GCF_000341125.1:WP_017598314.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 54294577: aconitate hydratase [Legionella pneumophila str. Lens]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_017598314.1 NCBI__GCF_000341125.1:WP_017598314.1
MSANSFGARDTLRVGDESYEIFRLDAVQGANRLPYSLKVLLENLLRTEDGANVTADHIRA
LGEWDAKAQPSQEIQFTPARVIMQDFTGVPCVVDLATMREAVRDLGGDPDKINPLAPAEL
VIDHSVVVDLFGRPDAFERNVEIEYERNYERYKFLRWGQTAFDEFKVVPPGTGIVHQANI
EHLARVTMSRNGQAYPDTCVGTDSHTTMQNGLGILGWGVGGIEAEAAMLGQPISMLIPRV
VGFKLSGQLKPGTTATDLVLTITEKLREHGVVGKFVEFYGEGVSSVPLANRATIGNMSPE
FGSTAAIFPVDDETIRYMRLTGRSEQQVALTEAYAKANGFWHDPAVEPEYSEYLELDLAE
VVPSIAGPKRPQDRIALSEAKPTWRHDVHNYVSDDEAGEESFPASDAPATTANGRPHRPV
KVTMADGTETEVDHGAVVIAAITSCTNTSNPSVMLGAALLAKKAVEKGLSRKPWVKTSMA
PGSKVVTDYYERSGLTPYLDKLGFNLVGYGCTTCIGNSGPLPEEISKAVQDNDLAVTAVL
SGNRNFEGRINPDVKMNYLASPPLVVAYALAGSLDVDITTEPLGVGSDGKPVYLADIWPS
AEEIQEVMDAAIASDMYESAYADVFAGDERWRSLPTPTGNTFEWEDESTYVRKPPYFEGM
ATTPSAVTDITGARVLAKLGDSVTTDHISPAGAIKPGTPAAEYLKSHGVERRDFNSYGSR
RGNHEVMIRGTFANIRLRNQIAPGTEGGYTRDFTQPEAPVSFIYDAAQNYAAQDIPLVVL
GGKEYGSGSSRDWAAKGTRLLGVRAVITESYERIHRSNLIGMGVLPLQFPEGQSADSLGL
TGEETFSITGVTELNEGRVPSTVKVSTDTGVEFDAVVRIDTPGEADYYRNGGILQYVLRQ
LIAK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory