PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_017895628.1 NCBI__GCF_000816635.1:WP_017895628.1 (379 amino acids)

SeqID: WP_017895628.1 NCBI__GCF_000816635.1:WP_017895628.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 61228131: Cystathionine beta-lyase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_017895628.1 NCBI__GCF_000816635.1:WP_017895628.1
MNIESLLIHGGIDGDKQTGAVSVPIYQTSTYRQNGLGENNGYEYSRTGNPTREALEKLIS
DIEAGYSGLAFASGMAAITAVLTLFKSGDKIILSDNVYGGTYRVLAKVFKNFNLNFELVD
TSNIKNVEDSITDDVKAIYIETPTNPLMTITDIKKISQIAKKNKLLTIVDNTFMTPYLQK
PIELGADIVIHSATKYLGGHSDLVAGLVVVNNEDLSKRLHFIQNSTGGILNPFDSWLLIR
GIKTLSVRMDRHEENAQYIAKFLNENPLVEKVYYPGLESHIGHDIQKKQAKGYGAIISFV
LKDTININDFFKKLKLITFGESLGGVESLMCHPASMTHAAIPYEIRQKVGIVDNLARLSV
GIENKEDLIEDLTSAIKLL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory