PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_019556561.1 NCBI__GCF_000381085.1:WP_019556561.1 (857 amino acids)

SeqID: WP_019556561.1 NCBI__GCF_000381085.1:WP_019556561.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596984: aconitate hydratase 2[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_019556561.1 NCBI__GCF_000381085.1:WP_019556561.1
MLDAYRSHVAERSEQGLPPLPLTAEQTASLVELIKNPPAGEESFVVDLLTNRVPPGVDEA
SYVKAGFLTDVANGTMTNDLISAEQATFLLGTMLGGYNVQPLISLLDSDKANVAEAAVKA
LSKTLLVYDAYHDVVEKSKTNDYAMQVMQSWANAEWFTNKPKMPEEITVTVFKVEGETNT
DDLSPATAAWSRPDIPLHAKEMLAARIDDVGAVMDQLKAKGHTVAYVGDVVGTGSSRKSA
MNSVMWFFGEDIHYVPNKRQGGVVLGGKIAPIFFNTAEDSGSLPIECDVDSMNMGDVITI
HPYAGKVTNEAGETLSTFEIAPETMPDEVRAGGRVPLIIGRGLTDKARTALGMGPSEIFI
RPSDKSQANHGYTLAQKMVGKACGIAGVRPGMYCEPHMTTVGSQDTTGAMTRDEMKELAC
LGFSADLVMQSFCHTAAYPKPVDITLQHSLPDFMTSRGGVALRPGDGVIHSWLNRLLLPD
TVGTGGDSHTRFPIGISFPAGSGLVAFGATLGVMPLNMPESVLVRFKGKMQPGVTLRDLV
NAIPYQAIQEGSLTIEKKGKKNVFNGRVLEIEGLEHLAVEQAFELSDASAERSANGCVVK
LSEEPIIAYLKSNMALIDWMVENGYADARTLLRRRDEMQAWINNPQLLSADADADYAAVI
EIDLNEIKEPIVACPNDPDDVKLLSDVAGTKIDEVFIGSCMTNIGHYRAAGKVLESMGNV
PTRLWIAPPTKMDERQLIEEGYYSIYGRVGARTEMPGCSLCMGNQARVMDGATVFSTSTR
NFPNRLGNGANVYLGSAELAAVCAALGKLPTPAEYLKEVAMLDTMGDDVYRYLQFDEMAD
YDVVSPKTLAEIGVAVG