PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_024750185.1 NCBI__GCF_000017845.1:WP_024750185.1 (433 amino acids)

SeqID: WP_024750185.1 NCBI__GCF_000017845.1:WP_024750185.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599283: probable aminotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_024750185.1 NCBI__GCF_000017845.1:WP_024750185.1
MVSTTSLKTTKSEDIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDHVKGAYIWDVDGNQY
IDYVGTWGPAICGHAHPEVIAALHDALDRGTSFGAPCLLENVLAEMVIDAVPSIEMVRFV
NSGTEACMSVLRLMRAFTGRDKIIKFQGCYHGHADMFLVQAGSGVATLGLPDSPGVPKTT
TANTLTAPYNDLEAVKALFAENPDEIAGVILEPVVGNSGFVVPDGGFLQGLRELTNEYGA
LLVFDEVMTGFRLSYGGAQEKFGVTPDLTTLGKVIGGGLPVGAYGGRKDIMSMVAPAGPM
YQAGTLSGNPLAMTAGIKTLELLQKPGTYNQLEQITQQLSEGLLKIAKEAGHQVCGGYIG
AMFGLFFTEGPVRNYDDAKKSDLAKFGRFHRGMLEKGVYLAPSQFEAGFTSLAHTSEDIE
KTLAAAKDVLSNL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory