PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_024850226.1 NCBI__GCF_000526715.1:WP_024850226.1 (1236 amino acids)

SeqID: WP_024850226.1 NCBI__GCF_000526715.1:WP_024850226.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597040: methionine synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_024850226.1 NCBI__GCF_000526715.1:WP_024850226.1
MTTKTERLQQLKSLLNERVVILDGAMGTMIQGLELTEEEFRGTRFADYHMDIKGNNDILV
ITQPKLIRDIHLQFLRNGVDIVETNSFNGTTIAQADYDMQEVVTELNLAAAKVAREACDI
AEQEDGKPRFVAGVLGPTNRTASISPDVNDPGFRNTSFDELVITYKQATHALLEGGVDTI
LIETIFDTLNAKAAIFAVKEVEDEVGYEVPIMLSGTITDASGRTLSGQTTESFYNAVAHA
EPLSVGLNCALGPEELRPYVEELSRVCETYISIHPNAGLPNEFGEYDETPEQMAAEIAVW
AEKGWINIIGGCCGTTPDHVAAMAQAAQKHPRRQLPTIKPACRLSGLEPLNIDDSSLFVN
VGERNNVTGSAKFKRLIIEDNYDEAIEIAVKQVEDGAQIIDVNMDEGMLDAKACMTRFLN
LLASEPEASRVPIMIDSSKWEVIEAGLKCIQGKGVVNSISLKEGEEAFIHHAKLVKKYGA
AAIIMAFDEDGQADTLERKIEICSRSYKVLTEKVGFLPQDIIFDPNIFAVATGIEEHNNY
GLDFINAVTWIKQNLPYAKISGGVSNVSFSFRGNNPVREAIHSVFLYYAIKEGMDMGIVN
AGQMAIYDDLPEKLRLAVEDVILNKDPEAGERLLEVAEEFRGDGSAASKVADLSWREASV
EKRLEHSLVKGITDFIEDDTEEARQKLGAPINVIEGPLMDGMNVVGDLFGSGKMFLPQVV
KSARVMKRAVAYLDPFLEAEKSSGQVQGKIVMATVKGDVHDIGKNIVGVVLQCNNFEVID
LGVMVPAEKILDTAIEQGANVIGLSGLITPSLEEMVNVAKLMKERGMNLPLLIGGATTSK
AHTAVKIEPQYEHPVVYVKDASRAVGVAQSLISNDLKSDFAAKIRAEYEQVREERKARAK
QVKRISINKARKNPSLTLDAWQDYTPTKPKFLGTKVLEDYPLEKLVERFDWSPFFQSWEL
HGLYPRILEDKVVGEEAKKLFADAQAMLQKILDEKWLTAKAIYGFYPANRVGDDIEIYSD
ETRTKVIHKLHHLRQQAEKKRGGANGCLSDFIAPKETGVADYVGLFAVTAGIGIDEHVER
FEKAHDDYNAIMLKALADRLAEAFAEKLHEIVRKEDWAYAADEELTNEDLIRERYQGIRP
AAGYPACPDHTEKGTIWEILKPDAAIGLEITESFAMTPTAAVSGTYFAHPDAKYFGVGSL
GRDQVEDYAQRKGWSIEKAETWLAPNLGYDPEDFAN