PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_025273525.1 NCBI__GCF_000527155.1:WP_025273525.1 (956 amino acids)

SeqID: WP_025273525.1 NCBI__GCF_000527155.1:WP_025273525.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Extracellular          0.26
    Periplasmic            0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_025273525.1 NCBI__GCF_000527155.1:WP_025273525.1
MTDFRQRATRYRPFHEEIRVHLPDRTWPDRIIDHAPTWCAVDLRDGNQALIDPMDLERKK
TMFQTLVDMGYKEIEVGFPAASQTDFDFVRALIEEERIPADVSIQVLTQCRDHLIKRTFE
SLRGARQAIVHFYNSTSILQRKVVFQADKPSITKIATDGAELCLKYAADITPDTDIRYEY
SPESFTGTELEYAVDICNAVAEVIDPSIDRPLILNLPATVEMATPNIYADSIEWFKRHFA
RPEAMILSVHPHNDRGTGVAAAELAVQAGADRVEGCLFGNGERTGNVCLVTLGMNLFTQG
VDPEIDFGDIDSIRRKVEYCNRLPVPERHPYAGDLVFTAFSGSHQDAIKKGLQALESEAD
QAGVAVEQYPWAVPYLPVDPKDIGRNYEAVIRVNSQSGKGGVSYIMHHDYGFDLPRRMQI
EFSQAIQKHTDHSGREVTPEEIHDVFRREYHPEYQPNARLAVGSCNTSTHGDEVTVEAVV
TLDGQEHKIIGDGNGPLSAFVSALAEVDVAVEVQEYVQHSLSTGSDAKSAAYVECAIGER
TVWGAGVHSNITLATLRALASAVNRVLGSLAGRRRSRRLPFVSGPAGLIDLLQPVETVAR
DVEIPGQEDPVQQTHEDPAAEQIGEHRPSENADFEVQPGHTPHRDRCAPGTRGIAGDVER
TPHQDDSTRQNRRTGHGQRTAPQLPTGNEIPNEGHDFQDEPNDQHASCSRHGHFLQRASN
GFAFSMAQRLPRHERFNPPKRSFSQPYRLKEHRQTGPQEGRTPSRAALTTHVPRKGLRSA
DELSRVGSRGRTLSQFVRPLQRQWQIVFQSKVHLSPFGGHKAAVEAQPGVSRAVGDNVPP
FRGGRPLNKQKTKHGRLDVLTPVGARQALNLRTQNLTELHTVEPGLLIVLPKCLLGNGLS
RVDSPARYLNAGLGNVNVTEGQHLPRVKSGPTEHIGHHPLANTHPSIIHNSSVLRT