PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_027178967.1 NCBI__GCF_000429985.1:WP_027178967.1 (651 amino acids)

SeqID: WP_027178967.1 NCBI__GCF_000429985.1:WP_027178967.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595249: potential phenazine-modifying enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_027178967.1 NCBI__GCF_000429985.1:WP_027178967.1
MCGISGFIDLTRSLDSEELSRRAGLMGKSQQSRGPDADAQWVDQEIGIAFDHRRLAIIDL
TEEGIQPMHSRSGRYVTVFNGEIYNYAELRSELETTAGFNGWRGHSDTEVLLEAIEQWGL
EKSLERFSGMFAIALWDRRERQLFLVRDRMGEKPLFYGRQGDTFYFASELKAIRQLESFK
PEINRDALCSYLRYHYVPSPGTIYNKVSSLMPGTWIRVDYDGTVSGPFSYWSLKDCAQKG
VDLSFTASSGEITDTLEDLLLKVIEREMVSDVPLGAFLSGGVDSSLIVALMQQCALAPVK
TFTIGFDDKAYNEAEEAAKVAAYIGTEHTELYVTPADALDVIPKIPKIWDQPFSDASQVP
THLVSMMTRKHVTVALSGDGGDELFAGYNRHFKGCGLWDKLASVPPGIRKFTAESLQKVP
ANEWNAFFEIIDPVLPRKLKMRLPGQKLHKLADVMTAASARDYYLKLTSNWFDPEKLVIN
GWEHPGPYQSPVNQPETSCLTEWMQFMDAATYLPDDIMTKVDRAAMAVSLETRAPFLDHE
IVEFSQRLPMSLKIQHGRGKKILRDILYKYVPQRLIERPKMGFGIPIDSWLRGPLRDWVE
DLLNPVRMMNEGYLHPEPIRKMWADHLSGKTDAQYKIWNILVFQSWLRYWM

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory