PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_028489631.1 NCBI__GCF_000621325.1:WP_028489631.1 (555 amino acids)

SeqID: WP_028489631.1 NCBI__GCF_000621325.1:WP_028489631.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2506182: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_028489631.1 NCBI__GCF_000621325.1:WP_028489631.1
MDKLWLQSYPKHVPAEIDTHQYHSLVDLFQRSVKQYGSLPAFSNMGKVLTYNDVDELTRQ
FAAYLIHGAGLKPGERIALMMPNLLQYPIALFGALRAGLVVVNTNPLYTDRELEHQLKDS
GATAIVITANFAHTLQDVLDKVPIKTIITTEIGDLFGFPKSLLVNLVVKYVKKMVPAFKL
PTAIKFNQALTLGKQYATRFQDAEPGHEDIAFLQYTGGTTGIAKGAALTHRNIIANMLQA
EAWTTADLVAGKEIVITALPLYHVFALTANAMFALKMGAKNVLITNPRDLPAFIKDLAHE
PFTFITGVNTLYNALLNHPDIGKVDFSRLKISLGGGMAVQKSVAERWKALTGVTLLEAYG
LTETSPAVAINPVDLHDYNGMIGLPVPSTEVSIRDVDGNELDIGAAGELWVRGPQVMQGY
WQRPDETANVMVEDGWLRTGDVAVINELGFIKLVDRLKDMVLVSGFNVYPNEVEDVLASH
PKVLEAGVIGAPDEHSGEIVKAFVVKKDESLTLEELRAYCRYELSAYKCPKQIVFVTSLP
KSNVGKILRKELRDL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory