PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_028990131.1 NCBI__GCF_000423825.1:WP_028990131.1 (810 amino acids)

SeqID: WP_028990131.1 NCBI__GCF_000423825.1:WP_028990131.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16131244: nitrite reductase, large subunit, NAD(P)H-binding [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_028990131.1 NCBI__GCF_000423825.1:WP_028990131.1
MASKAKLVLIGNGMAGIRTLEELLKMAPGAFEITVFGAEPHPNYNRILLSPVLSGEMRLE
DTILNDWDWYHDHGINLQAGRKIVQIDRARRRVIAADGIEAAYDRLLIATGSNPFLLPIP
GRDLPGVVAYRDISDVEQMLAASAKGGRAVVIGGGLLGLEAANGLLSRGMDVSVVHLHPW
LMERQLDQVGGALLQKALAQRGMRFYLPKQTEAVLGETHVTGLRFRDGEEIPADLVVMAV
GIRPNIELAKAAGIHCERGIVVNDTMQTYDPRIYAVGECVQHRGQTYGLVAPLFEQAKVA
ANHLAAYGRMRYEGSITSTKLKVTGIDLFSAGDFTGGPEVEEITLLDGTYGVYKKVVLKD
NKVVGSVLYGDTSIGPWLFQLLRENHDIGEIRAHLLFGETHLGDAGHAGHDQAASLPDSA
EICGCNGVCKGTIVQAIREQGLFTLEEVRQQTKASSSCGSCTGLVEQLLASTLGGVYDQS
PKKKPLCGCTDLTHDEVREAIVAEKLLSARQVFEYLNWNHPGGCATCRPAVNYYVRTAWP
AEGLDDPQMHFINERAHANIQKDGTYSVVPRIYGGVTSPAELRRIAEVAERFQVPMVKFT
GGQRLDLLGVKKEDLPAIWATLGMPSGHAYGKSLRTVKTCVGTEFCRFGTQDSTRMGIEL
ERALEGMWAPHKVKLAASGCPRNCAESTVKDVGVIGVDSGWEIYIGGNGGMKVRAADLLC
KVKTNAEAIEITKAFLQLYRQEAHYLERTAPWVERVGLEHIKVRVVDDPTNRRRLAEALD
FALAQERDPWAAAIEGHLDVHAEPLARVAP