PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_029132406.1 NCBI__GCF_000428045.1:WP_029132406.1 (862 amino acids)

SeqID: WP_029132406.1 NCBI__GCF_000428045.1:WP_029132406.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596984: aconitate hydratase 2[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_029132406.1 NCBI__GCF_000428045.1:WP_029132406.1
MLESYRKHVEERAAEGIPPLPLNPEQTAQLVELLKNPPAGEEAYLLDLIIHRVPAGVDQS
AYVKAAFLADVAKGSCNCPLIDRVKATELLGTMLGGYNIAPLVEALDDEALAPTAVKALS
HTLLVFDAFNDVKEKADAGNDHAKAILQSWAEGEWFTQKPELAEKVTLTVFKVTGETNTD
DLSPAPDAWSRPDIPLHANAMLKMEREGITPDQPGVIGPIKFIEELKQKGHPVAYVGDVV
GTGSSRKSATNSVLWHMGDDIPFIPNKRAGGFCLGGKIAPIFFNTMEDAGALPFECDVSN
LNMGDVIDVYPYEGVVKNHESGEELCRFELKTDVLLDEVRAGGRIPLIIGRGLTARAREA
LGLDPSTLFKSPAPAADSTKGYSLAQKMVGRACGVEGVRPGAYCEPRMTTVGSQDTTGPM
TRDELKDLACLGFSADLVMQSFCHTAAYPKPVDITTHHTLPDFISSRGGVALRPGDGIIH
SWLNRMLLPDTLGTGGDSHTRFPIGLSFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKM
QPGITLRDLVNAIPYYAIKQGLLTVAKAGKKNIFSGRVLEIEGLPDLKVEQAFELSDASA
ERSAAGCTIKLDKAPIIEYLQSNITLLKWMIANDYQDPRTLQRRIEGMEKWLADPQLLEG
DADAEYAAVIEIDLADVKEPILACPNDPDDVKQLSEVAGQKIDEVFIGSCMTNIGHFRAA
GKLLEGKHDIPTRLWMAPPTKMDAYVLNEEGYYATFGKAGARMEMPGCSLCMGNQARVKD
NATVVSTSTRNFPNRLGTGANVYLSSAELAAVAAIIGKLPTVEEYMVYADQIDAMSADIF
RYMNFDQIEAYQSVANRVEFVA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory