PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_034040615.1 NCBI__GCF_000789235.1:WP_034040615.1 (755 amino acids)

SeqID: WP_034040615.1 NCBI__GCF_000789235.1:WP_034040615.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2506131: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_034040615.1 NCBI__GCF_000789235.1:WP_034040615.1
MAFDIDMIKGVYTKMAERVDKAREIVGKPLTLSEKILYSHLWDGNPTKAFARGKDYVDFA
PDRIACQDATAQMALLQFMQAGKTKVAVPTTVHCDHLIQAKEGAATDLKHANNVSSEVFN
FLESVSNKYGIGFWKPGAGIIHQVVLENYAFPGGMMIGTDSHTVNAGGLGMVAIGVGGAD
AVDVMAGMAWELKFPKLIGVKLTGKLSGWTAPKDVILKVAEILTVKGGTGAIVEYFGPGA
TSMSCTGKGTICNMGAEIGATTSTFGYDESMERYLRATDRADVADAANTVKQHLTADAEV
YANPEQYFDQVIEINLSELGPLLNGPFTPDLSTTVGKAMTEKATANEWPLKVEWGLIGSC
TNSSYEDLSRASSIAQQALDKGLKMKAELGINPGSEQVRFTAERDGILGIFENLDAKIFT
NACGPCIGQWARYSDPKNAPKNSIVHSFNRNFAKRADGNPNTHAFVASPELTAAIAVAGR
LDFNPLTDKLINENGQEVMFDEPTGWELPPKGFAVDDNGYLAPEADGSHVQVSVKDDSER
LQLLEPFTPIGNSITGAKLLIKAFGKCTTDHISMAGPWLRFRGHLDNIANNTLIGAVNAF
GKKTNFVKNQLTGEYGGVPDTARAYKAAGIKTIVVGDHNYGEGSSREHAAMQPRHLGVAA
VIVKSFARIHETNLKKQGMLGLTFANESDYDLIQENDTFNFIDLNAFAPGKQLTLEAVHE
DGSKDLIKLNHTYNESQIEWYNEGSALNLIKKQNA