PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_034270944.1 NCBI__GCF_000504245.1:WP_034270944.1 (727 amino acids)

SeqID: WP_034270944.1 NCBI__GCF_000504245.1:WP_034270944.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_034270944.1 NCBI__GCF_000504245.1:WP_034270944.1
MAEPEPAAQDKGRGLKRRKFLTFLVAAPTLTVAGRFGFDALTEASAVPSLPSVEEIADLG
EVIRLASMPTMHLMVLEVTEDTTVRFELPRLEVGQGISTSIAMVLAEELDARLDDVDVEL
SDSRPELHFNQITAGSTTMRVLWDPVRRMAADARARLVNAAANQWGLPAEQLTTKDSAVH
APDGRTLSYGELSAAAREESGNGEPKPASEYTVVGTPVARTDARDIVTGKAQYAMDLQIE
GALPTVVARPPTIKGTVGSVNDARARSMPGVVAITEIPTGVAVSAETFYDAMRARDALEI
SWKPGPIDTVSDSDIRKKLKNVAHPLAAPKLRGRHLDATFDFAFVNHAPMEVESAVADVR
HDGTAEVWMPSQTAIWAQGAIAKELGLNRDAVSVHVTRAGGSFGRRLFADVGLEAARVSQ
AIGRPVKLMRTRQDDMKHGRMRPAYHQKIRASYTKGEVLSFEHRVTGVGLDFDHGLGEAL
TSTLAQTVEGGASQYYFAVSQSMPYHVGVVNHTLQEVQLGIPTGSFRSVFSGTVRAAEEV
VMDELAEQMGKDPLEFRREVAKADSGKAVLTKVAEVSGWGKDMPAGHALGVGYHSEYRSH
AACVVEINATDPANPRVTKAFIAADVGQVINQKGLEAQLMGATMDGIATVLQAGVHIDNG
AVRESSYGDFLWTKQGDSPTQFEVHLIRTDWAPGGAGELALPAAAGAVANAYAKATGTKP
RSFPINH