PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_035135251.1 NCBI__GCF_000769915.1:WP_035135251.1 (714 amino acids)

SeqID: WP_035135251.1 NCBI__GCF_000769915.1:WP_035135251.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            2.50
    Extracellular          2.50
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_035135251.1 NCBI__GCF_000769915.1:WP_035135251.1
MKKVIFALCFCLAVLANANAQELKSPNGNFNLKFFLQNDGTPAYSLTYKGKEVVKPSKLG
LELKDDEKSLLNDFTVTDTKTAMFDENWTPVWGEVKTIRNHYNELAVSLNQKGTNRQMVI
RFRLFDDGLGFRYEFPQQKNLVYFIIKEERTQFAMTGDHTAYWIPGDYDTQEYDYTVSKL
SEIRGLMEKSITANVSQKSFSPTGVQTSLMLKTDDGIYINLHEAALINYACMHLNLDDKN
MVFESWLTPDAQGNKGHVQAPFNTPWRTVIVSDDARDILASKITLNLNEPCKLDDTSWIK
PVKYIGVWWEMITGKSTWAYTDDLPSVQLGITDFSKVKPNGKHAANTAHVKEYIDFAAKH
GFDAVLVEGWNVGWEDWFGHSKDYVFDFVTPYPDFDVKGIRDYAKSKGVKMIMHHETSSS
VRNYERHMDAAYQFMKDNGYDAVKSGYVGNILPRGENHYSQWIVNHYQYALEKAAEYKIM
VNAHEAVRPTGICRTYPNLIGNESARGTEYQAFGGSKPNHVAMLPFTRLIGGPMDYTPGI
FEMEISKFSPNNNSHVNSTLANQLALYVTMYSPLQMAADLPEHYNQFLDAFQFIKDVPVE
WDDSKYIEAEPAEYITAARKEKGTNNWFVGSVGGYEARTSTIKLDFLDKGKTYIATVYAD
ANNAHYKTNPQAYTIKKGIVTSKTKLSQFVAPGGGYAISIIEATKAETKGLKKL