PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_035704441.1 NCBI__GCF_000691145.1:WP_035704441.1 (446 amino acids)

SeqID: WP_035704441.1 NCBI__GCF_000691145.1:WP_035704441.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 71159382: Anaerobic glycerol-3-phosphate dehydrogenase subunit C]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Extracellular          0.00
    Periplasmic            0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_035704441.1 NCBI__GCF_000691145.1:WP_035704441.1
MSSSSKQKEIQQQFQEQMDEKELLNCMRCGFCLPSCPTYIESGQQETHSPRGRIALMKAV
RDGVIEPDEDVEHSLNLCLGCRACEPVCPSGVKYGQLLEDARDIIQQHKKQSFPVKLMRR
VVFKGLFPSQSRMRQAASFLRFYQTSGLQTAARKTRILKVLPSHLQLMEQALPKVPPQKK
KRLNEYKAIGQAKKRVAFFTGCLMDTVFSNTNKATIHLLQLAGCDVIVPPIQTCCGALHG
HSGEKDQAKQLAKRNIEAFEETDADAIIMNAGGCGAFLSDYGHLLQDDPDFQKRSKAFSQ
KITDISSILVELEFHCRVPLALPAQVITYQDSCHLRNGMNVQQAPRVLMKAIQGVTFKEM
KDAGRCCGSAGIYNILQPDMSMQILDHKMTEASNTAAAAIVTSNPGCQLQMAAGVKKAGH
MPSMRAIHLADFLLEAVQYGKKASSS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory