PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_036834456.1 NCBI__GCF_000775615.1:WP_036834456.1 (1079 amino acids)

SeqID: WP_036834456.1 NCBI__GCF_000775615.1:WP_036834456.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1723836: LAO/AO transport system kinase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_036834456.1 NCBI__GCF_000775615.1:WP_036834456.1
METEKYQPKHAVRFVTASSLFDGHDASINIMRRILQASGAEVIHLGHNRSVEEVVNAAIQ
EDAQGIAMSSYQGGHVEYFKYMIDLLKAKGADHIRVYGGGGGVIIPREIKELHDYGVARI
FSPEDGREYGLQGMINQMIEACDFQPPLHVEQHMQQLQQGDSQAIARFITYTENTTIHET
EPAAAVEKLLEQQTKSIPVLGITGTGGAGKSSLTDELIRRFLNEIPERKVAILSVDPTKR
KTGGALLGDRIRMNAIFSDRVYMRSLATRDSRSELSKSIDEAIQVVKAAGFDLIVVETSG
IGQGDAAVTDVTDLSMYVMTAEFGAPSQLEKIDMIDYADFIVINKFEQKGSADALRQVRK
QYERSHMLFHEDQTTFPIYGTIASQFNDPGTNTLFAALVDLINDKYGWEESTPFERVTNV
EKQNLIIPPERQQYLRDIVQTVHHYHEKAEEQSDKARKWYQLTKSANLIEEETMKQQLLT
TAAHYEHQLDPNHKQTLEQWDDLKHRYSQEVMTYAVRNKEITIDLTTESLSGLQIPKVAL
PTYHDWGDRLLWVLRENIPGAFPFTAGVFPFKRKGEDPTRQFAGEGTPDRTNRRFHYLSE
GEAAKRLSTAFDSVTLYGEDPDERPDIYGKVGESGVSICTLDDMQKLYAGFDLCHPTTSV
SMTINGPAPIILAMFFNTAIDQQIEMFKKQEGREPNQEERDRIKAETISVVRGTVQADIL
KEDQGQNTCIFSTEFALRMMGDIQQYFIDHDVKNYYSVSISGYHIAEAGANPITQLAFTL
ANGFTYVEYYLSRGMDINKFAPNLSFFFSNGLDPEYTVIGRVARRIWAIVMRDKYGANER
SQKLKYHVQTSGRSLHAQEIDFNDIRTTLQALLAIQDNCNSLHTNSYDEAITTPTEESVR
RAMAIQMIINKEFGLTKNENSLQGSFIVEELTHLVEEAVLQEFERMNDRGGVLGAMERQY
QRGKIQEESLYYEGKKHSGDLPIIGVNTYLNPNPPSEEDIDSMELARASQEEKMHQIHSL
RDFQERNAQVTENALQRLKQVAKQNGNIFAELMETVKVASLGQITNALYEVGGQYRRNM

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory