PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_038023141.1 NCBI__GCF_000757425.2:WP_038023141.1 (463 amino acids)

SeqID: WP_038023141.1 NCBI__GCF_000757425.2:WP_038023141.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 584838: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_038023141.1 NCBI__GCF_000757425.2:WP_038023141.1
MNLFPESFLWGGAIAANQTEGAWREDGKGLSTSDVQPKGIFGEIDLRTSTQSQLKDIAID
FYHRYPQDIALFAEMGFTCLRLSIAWTRIFPRGDESEPNEAGLAYYDNLFTELEKYNIQP
MVTLSHYEMPWALVSEYGGWGNRQVIEFFIRYARVVFTRYRQRVSLWLTFNEINMSLHAP
LTGVGIAADSSLNDIYQAIHHQLVASGLAVQACHEIIPQAKIGNMLLGGLLYPLTPKPED
VWATLSENRHWLFFGDVQVRGEYPGYMQRYFRENNICLEITDQDKAALKHSIDFISFSYY
MSGCACADASAHDSCQGNILNMIPNPHLAASEWGWQIDPVGLRVLLNLLWDRYNKPLFIV
ENGLGARDQLTEDHQVIDDYRISYLNSHLLQVREALEDGVEIMGYTSWGPIDLVSASKAE
FLKRYGFIYVDRNDDGEGSLERYRKKSFGWYQSVIASRGAVLK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory