Running PSORTb v3.0 on WP_038214331.1 NCBI__GCF_000745855.1:WP_038214331.1 (348 amino acids)
SeqID: WP_038214331.1 NCBI__GCF_000745855.1:WP_038214331.1 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Cytoplasmic [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Cytoplasmic [matched 15600101: hypothetical protein[Pseudomonas aeruginosa PAO1]] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: Cytoplasmic 9.97 Periplasmic 0.01 CytoplasmicMembrane 0.01 Extracellular 0.00 OuterMembrane 0.00 Final Prediction: Cytoplasmic 9.97 -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in the ENIGMA genome browser
>WP_038214331.1 NCBI__GCF_000745855.1:WP_038214331.1 MSTRFIDVPALAQLLQRVGLQPFIEGLAAAIEEDFRRWPDFDKTARLASHSPQGVIELMP VAGPARYAFKYVNGHPGNPARGLPTVMAFGALADVDTGMPVLLAELTLTTALRTAATSAL AARALARPGARRMALVGCGAQAEFQALAFHALLGVAELRVHDRDSAAVDKLAHNLAPWRG LRVHRCADAAEAVRGADVVTTATADKRHAHVLLPAMVEPGMHLNAVGGDCPGKTELHPEV VRAARVFVEYAPQTRVEGEIQQMPAGFPVTELWQVLSGRVPGRTGAQEVTLFDSVGFALE DYAALRFVQGLAAAHGVGREVELVPQTPDPKDLFGLALGTAAGLRRAA
Lawrence Berkeley National Laboratory