PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_039950232.1 NCBI__GCF_900129655.1:WP_039950232.1 (856 amino acids)

SeqID: WP_039950232.1 NCBI__GCF_900129655.1:WP_039950232.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 20141276: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    CytoplasmicMembrane    0.12
    Extracellular          0.11
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_039950232.1 NCBI__GCF_900129655.1:WP_039950232.1
MMKRYRKDVSVFLFLLVSSVCQAQQLPYQQAALPVEVRVDDLLQRMTLDEKIAQIRHVHS
WDIFNGQELDENKLAKVVGDKCWGFVEGFPLTGENCRKNMRKIQEYMLNHTRLRIPCFNV
AEALHGSAHEGSTIYPQNIALGSTFNPDLAYRKAKMIAGELHAQGMKQILAPCVDVVRDL
RWGRVEESYGEDPFLCGLFGIAEVKGYQEQGISPMLKHFGPHGNPLGGLNLASVECGVRD
LHDIYLKPFEMIIKSQPLKAVMSTYNSWNRIPNSASHYLLTDVLRKQWGFTGYVYSDWGA
IEMLQTFHHTANSPEECALQALMAGLDVEASSECYPALKQAVKEGRLPVSYIDEAVRRVL
TAKFETGLFEDPFGEKYRAGKVHSEESVRLAREIADESVVLLKNEGKLLPLDEKRLDAVA
VIGPNADQVQFGDYTWSRSNKDGVTPLQGIRRLVGNKVKVHYAKGCDMMSPDTSLIAKAV
EAARKSDVAILFVGSSSASLARDYSNTNCGEGFDLNDLTLAGAQSGLIKAVYATGTPVVL
VLVSGKPFVLSWEKEHIPAILAQWYAGEQEGNSIADILFGRVNPSGHLTFSFPQSTGHLP
VYYNHLPSDKGFYKKPGSYSEPGRDYVFSSPAALWSFGHGLSYTDFVFEGIDTSLRNDSI
YVKCTLRNVGNRSGKEVVQLYVRDLVSSVVMPVQQLKAFEKVGLKAGESSEVQLSLPVSE
LAISDNDGKRVIEPGAFEFQLGNASDRILLRDTLWIGKEVREKKQCSVPVEKKTVSVGKK
IEVRGVVRDIQATLVHGVDIYTKSDGILVGCTDCNGAFMVEASEGDILVFRKKGYAYRDA
EVLSGTLNIRLTYSNE