PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_041100439.1 NCBI__GCF_000828635.1:WP_041100439.1 (659 amino acids)

SeqID: WP_041100439.1 NCBI__GCF_000828635.1:WP_041100439.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1730032: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_041100439.1 NCBI__GCF_000828635.1:WP_041100439.1
MNNLFKDSELAACADDLSRRVYTSRLLGRDKTLVLHGGGNTSVKAVGKNVFGEDEDILYV
KGSGWDLEKIEEGGFAPVHLGHLKRLAGLPSLSDPDMVNELVTHMTRASAPVPSVEAILH
ALLPWKYVDHTHADAVVTITNSVDGEARIREIYGDAVVVVPYVMPGFDLARLCAEQFSKQ
AGPQTIGMVLLNHGIFSFGETARESYERMIDLVGRAEDYLKRNKAWDIAPASNLPVGADA
GSAIAMASLRKDISAVAGFPVVLARHADAQAMAFVRRDDLATIARQGPATPDHVIRTKRL
PMLGRDVQAYADAYRAYFAAHEPLARERKTMLDAAPRVVLDAELGLCAVGRSAKDAAIVA
EIYAHTMEIIARATALGGYRALPAQDIFDVEYWDLEQAKLKKGGKPAAFAGEVALVTGAA
SGIGKACVDALLARGAAVVGLDLNPAICALYQRPDFLGIACDVTIEDSLKDALARTVDAF
GGLDMLVLNAGIFPGGCRIDALKTDEWRKVMQVNLDAGFVLMREAHPFLKLAPRGGRVVI
IGSKNVPAPGPGAAAYSASKAALNQLARVAALEWGGDNIRINSLHPNAVFDTGLWTDEVL
VSRAKHYGLSVEAYKTNNILGTEVTSRDVAELAAEMCGALFAKTTGAQVPVDGGNDRVI

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory