PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_043527536.1 NCBI__GCF_000759345.1:WP_043527536.1 (629 amino acids)

SeqID: WP_043527536.1 NCBI__GCF_000759345.1:WP_043527536.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598390: phosphogluconate dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_043527536.1 NCBI__GCF_000759345.1:WP_043527536.1
MAIQPPPLHETVDRVTRRIRERSSHRRDLYEQHMEEQHRQGVHRGELSCGNLAHGFAGCD
HPGDKDRLKLTNSANLGIVSSYNDMLSAHRPFEDYPATIKEAARGMGSTAQFAGGVPAMC
DGVTQGQPGMELSLFSRDVIAMATAVALSHNMFDAALYLGICDKIVPGLFIGAARFGHLP
AVFVPGGPMTSGLPNNEKARVRQLYAEGKASREDLLEAESQSYHSPGTCTFYGTANSNQL
MMEMMGLHLPGASFVNPGTPIRDALTRYATEQAIRNTEQSGDYRPFYKQIDERAIVNAMV
GLLASGGSTNHTLHLVAMAAAAGLTITWDDFTELSAVIPSMTRIYPNGQADVNHFQAAGG
MSLLIRELIGAGLIHADIPTVFGTDLTAYTQEPFLEDGKLVWREGPAQSHDLDVLRPVAE
PFSPTGGLTVLDGNLGRGVIKVSAVKQEHRVVEAPVRIFNDQNQVKAAFESGELDRDVVV
VVRFQGPKANGMPELHKLTPFLGVLQDRGYKVALVTDGRMSGASGKVPAAIHITPEAIDR
GPLAKLKDGDVVRLDTDKGELRALVDDAELSGRPLLDPNLEHNHFGMGRELFSGFRHLAA
GAEEGAGVFGGFENDVMSRELEKIQQEDQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory