PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_043528536.1 NCBI__GCF_000759345.1:WP_043528536.1 (1233 amino acids)

SeqID: WP_043528536.1 NCBI__GCF_000759345.1:WP_043528536.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597040: methionine synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_043528536.1 NCBI__GCF_000759345.1:WP_043528536.1
MAAAPTSLTVTLRDALANRILILDGGMGTMLQNAGLDESDFRGDRFQDWPSELKGNNDLL
ALTRPDIVRDIHRDYLEAGAEIIETNTFNSTRLSQSDYGMQALVPELNRESARIARQIAD
DVAEETGIPRYVAGVLGPTSRTASLSPDVNDPAKRNVTFDELRENYLEAAEALIEGGADL
ILIETIFDTLNAKAAIYALEELFDARGIRYPVMISGTITDASGRTLSGQTNEAFWNSVRH
ARPLSIGLNCALGAEELRPYLEELSNKADTFVSAHPNAGLPNEFGEYDQTPEEMADIVAE
FARSGLVNIIGGCCGSTPDHIRAIAEAVKGIAPRQVPERPHICRLAGLEPFNIATDSLFV
NVGERTNVTGSARFKRLIVEEDYTTALEVALEQVENGAQIIDINMDEGMLESEEAMVRFL
NLIAGEPDIARVPIMIDSSKWEIINAGLKCVQGKAVVNSISLKEGEDAFRQQATACYRFG
AAVVVMAFDEEGQADSFARKTQICQRAYRILVDEIGFPPEDIIFDPNIFAIATGIDEHNN
YAVDFIQATQWIREHLPHAMVSGGVSNVSFSFRGNNPVREAIHSVFLYHAIRAGLTMGIV
NAGQLAVYDDLPAELRDAVEDVVLNRRDDATERLLEIADRYKGDGSTANKKEDLEWRSWP
VEQRISHALVKGITTHIEEDTEQARQRAERPIEVIEGPLMDGMNVVGDLFGAGKMFLPQV
VKSARVMKRAVAYLIPFIEAEKTEDTQAKGKIVMATVKGDVHDIGKNIVGVVLQCNNYDV
VDLGVMVPAEKILQTAKEEKADIIGLSGLITPSLDEMVHVAKEMQRQGFDLPLLIGGATT
SKAHTAVKIEPQYEHPVIYVTDASRAVGVAGRLLSPAQKPAYIAEIREEYESVRERNAKR
RPKAADLSYEQARKRRFRTDWSQYTPTKPTLSGLEVFDDYPLDELIERIDWTPFFMSWQL
SGKYPKILEDKVVGEAARNLFADAQTMLRKLIDEKHVTARGVIGLWPANSVDDDVIEVYT
DESRSEVLERLFHVRQQTTKNREGICYSLADFIAPKESGKPDWIGGFAVTAGHGVDELAK
RYEAAGDDYNAILVQSLTDRLAEAFAERIHERVRKEYWGYVPDEALPNEALIAEKYQGIR
PAPGYPACPDHTEKATLFRLLDAERHSGLELTESFAMWPAAAVSGWYFSHPESKYFSTGK
ITRDQVEVLAERKGMELKELERWLSPVLSYDPE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory