Running PSORTb v3.0 on WP_043917276.1 NCBI__GCF_000877395.1:WP_043917276.1 (252 amino acids)
SeqID: WP_043917276.1 NCBI__GCF_000877395.1:WP_043917276.1 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Unknown [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Periplasmic [matched 15599060: probable amino acid binding protein[Pseudomonas aeruginosa PAO1]] SCL-BLASTe- Unknown [No matches against database] Signal- Non-Cytoplasmic [Signal peptide detected] Localization Scores: Periplasmic 9.76 Extracellular 0.11 OuterMembrane 0.06 CytoplasmicMembrane 0.06 Cytoplasmic 0.00 Final Prediction: Periplasmic 9.76 -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in the ENIGMA genome browser
>WP_043917276.1 NCBI__GCF_000877395.1:WP_043917276.1 MKKIVTLAAAAAISATAATADVKIGISAEAYPPFAEKDAAGNWVGWEMEIIDAVCAAMEE ECEVVPVAWDGIIPALLSGRMDAIMASMSITEERMRTIDFSDKYYNTPAVIVAAKDSEIS GDPASLDGKIVGVQVSTIHANYVEKHFEEQAEMKVYQTFDEHNQDLVAGRVDAVVGDSLA FQDFLSSDAGQAYEVKGELNDEEVFGPGVGVGLRQGEDELKERFNAAIRQIREDGTYDEI SNRYFDFDIYGG
Lawrence Berkeley National Laboratory