PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_046009357.1 NCBI__GCF_000967895.1:WP_046009357.1 (928 amino acids)

SeqID: WP_046009357.1 NCBI__GCF_000967895.1:WP_046009357.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596984: aconitate hydratase 2[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_046009357.1 NCBI__GCF_000967895.1:WP_046009357.1
MSLYTEYLEEIEVRKNDLGLNPKPIDTADLLSEIIAQIKDTGNAAREASLDFFIYNTIPG
TTSAAVVKAAFLKDIALGTETVAEITPEFALEQLSHMKGGPSVEALLDIALSDDAQAKAA
GEVLKSQVFLYEADTSRIADAFKAGNAIAKDLLESYAAAEFFTKLPEIPAKIDVVTYIAA
EGDISTDLLSPGNQSHSRADRELHGQCMITPEAQQEIVALGKKHPNAKVMLIAEKGTMGV
GSSRMSGVNNVALWAGEKTSPYIPFINNAPVVAGTNGIAPIFLTTVGVTGGIGLDLKNWV
KKVDAEGNTVKDANGDNVLEEAYSVATGTVLTIDTAAKKLYNGDKELVDVSDAFSPQKVE
FMKAGGSYALTFGKKLQTFAAETLGIQAPTVFAPSKEISVEGQGLTAVEKIFNRNAVGVA
SSTPLHTGSDVRVKVNIVGSQDTTGPMTCQELESMAASTISPSVDGAFQSGCHTASVWDN
KAKANTPKLMAFMNDFGVITARDPKGVYHSMTDVIHKVLNDITIDDRAIIIGGDSHTRMS
KGVAFGADSGTVAIALATGECAMPIPESVKVTFKGQMKDHIDFRDVVHSTQAQMLNKFGE
NVFQGRVIEVQIGTLLADQAFTFTDWTAEMKAKASICISTDDTLVQSLELSKARIQIMIN
KGMDNATNMLQGLIDLADKRIAGIQSGEEPALAPDDTATYFAEMVVDLDLIDEPMIADPD
VNNEDASKRYTHDVIRQASFYDGRKVDLGFVGSCMVHKGDMQIIAAMLRNLEKNGPITFN
SPLVVAPPTYNIVDELKAEGDWEVLAKYAGFTFDDSHPKEAARTKYENIMYLERPGCNLC
MGNQEKAEAGDTVLATSTRLFQGRVVEDSTEKKGESLLGSTPMVVLASILGRFPTIAEYK
AAVEGINLTSFAPPSEDLARPAIPLKAV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory