PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_046158511.1 NCBI__GCF_000971335.1:WP_046158511.1 (1161 amino acids)

SeqID: WP_046158511.1 NCBI__GCF_000971335.1:WP_046158511.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Extracellular          2.00
    Cytoplasmic            2.00
    Periplasmic            2.00
    CytoplasmicMembrane    2.00
    OuterMembrane          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_046158511.1 NCBI__GCF_000971335.1:WP_046158511.1
MSIRHADLEEKYTAPTGQVLMTGIQALVRLPMLQQELDRAAGLNTAGYVTGYRGSPLGNV
DQTMIKAKKHLDAHNVVFHPGLNEDLAATAVWGTQQVNIFEGAKYDGVYSLWYGKGPGVD
RSGDVLKHGNAAGTSKHGGVLLVCGDDHAAKSSTFPHQSDHILAASMIPVLSPSGVQEVL
DLGLHGWAMSRYSGCWVSIKAITDTVESSAIVDITPERLEFKIPKDFPLPEDGLNIRWPD
TPLAQEKRVLHHRLYAALAYARENKLNRITLDSPKPRLGIITCGKSYLDVMQALDDLGIS
EAQAADIGLRIFKVGMVWPLEPEGVRQFAQGLEEILVVEEKRQIIEYQLKEQLYNWRDDI
RPRVVGKFAEKGEWALPHGDWLLPAAGELTPAMIARAIANRLALIFDSPVIHDRLKFYDD
KEAQLVQPRESIARVPHYCSGCPHNTSTKLPEGSRAVAGIGCHYMAHWISPENTKTFTQM
GGEGITWLGQAPFTTTRHIFTNLGDGTYFHSGILAIRAAVAGKVNITYKILYNDAVAMTG
GQHVDGYLDVPMMTRQLAAEGVKRIVITSDDPDKYQNAQGLAPGIDVFHRRELDRVQREL
RDIEGVTILIHDQTCAAEKRRRRKRNEFPDPAKRAFINERVCEGCGDCSKKSGCLSVLPV
ETPLGRKRKIDQSSCNKDYSCVEGFCPSFVTVEGGKLRKPAGASADLAKMPALPMPKIPA
LHEPFGIMVTGVGGTGVVTIGQVLGMAAYLDNKGVTVLDMAGLAQKGGSVWSHVRIADSQ
DKLHAVRIAAGDANLVLGCDLVVTAAEEALAKMRDGFSHAIVNSYESPTSGFLKNPDIRY
PAKAMKDAIVEAVGAGRFSEVNANKLATALMGDAIAANMFMLGYGWQKGLVPVSLEAIME
AVRLNGAAVKFNQDAFTWGRHAAQDLARVEALVSPTAVVQFVPRETPDAVVHHRSTLLAA
YQNGALAERYKALVQQVRQAEEAAQPGSTALTLAAARAYHHLLAYKDEYEVARLYSDGEF
QREVAAQFDGDYKLRFHIGVAWLTRGQPRKIAIGSWLMPAMKVLAKLRFLRGTALDPFAW
QDDRKLERQLIAEFEQELPALLAKLTPDTLPRAVEWMKTWEGVRGFGHIKLANYRQAKTR
QAELQGGPAQAGKPAANAAVA