PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_047006996.1 NCBI__GCF_001010925.1:WP_047006996.1 (472 amino acids)

SeqID: WP_047006996.1 NCBI__GCF_001010925.1:WP_047006996.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600515: phosphomannomutase AlgC[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_047006996.1 NCBI__GCF_001010925.1:WP_047006996.1
MSHIFDPTTLREYDIRGIIGETLGPDDARAIGRGFATLLLREGSVEGRRPCVAVGYDGRV
SSPMLEHALIEGLTSGGCAVRRIGMSATPMLYYAEASAEEVDGGIQITGSHNPANYNGFK
MVFEGRPFFGGDIQRLGELAAAGDWTSGMGEVDSVDIIEQYVERLLTALSGIDEGVLSGL
RIGWDAGNGAAGPALELLTQRLPGEHHLLYTEVDGNFPNHHPDPTVEANLVDLRALVAAK
NLDFGVAFDGDGDRIGAIDGEGRVVWGDQLLMIYAEDLLGRLPNATVIADVKASRALFDH
VAAHGGKPVMWKTGHSLIKSKMKEVSSPLAGEMSGHVFFADDYYGFDDALYAAVRLMAAS
ARLGRSVTELRGAMPEMINTPEMRFQVDESRKFAAIEEIAARIAASDAVADTTDGVRVTT
DDGWWLLRASNTQDVLVARAESDTQEGLERLLASIDEQLALSGLERGSNVGH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory