PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_048081448.1 NCBI__GCF_000745485.1:WP_048081448.1 (356 amino acids)

SeqID: WP_048081448.1 NCBI__GCF_000745485.1:WP_048081448.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16128341: alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_048081448.1 NCBI__GCF_000745485.1:WP_048081448.1
MKGFAMLKIGETGWIEKDRPKCGPRDAIVRPTCLAPCTSDVHTVWEGAIGDRHNMILGHE
AVGIVDEVGTEVKDFKPGDRVIVPAITPDWDSEAVQRGFPSQTGGACGGWKYSNFKDGVF
GEFFHVNLADNNLAHLPEGMSQEAAVMITDMMSTGFMGAENAGIELGSTVAVLGIGAVGL
CGIAGAKLRGAGRIFAVGTRPVSVEVAKKYGATDIISYRDGDTAEQILDATDGEGVDAVI
ISGGGPDILIDACKMAKAGSKISNNNYFGKGEGEKDTLPLCRVGWGFGMADKDIITGLCP
GGRVRMERLADIVTYGRMDPELLVTHKFKGFDKIEEALLLMKEKPRDLIKPVVLLE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory