Running PSORTb v3.0 on WP_052384206.1 NCBI__GCF_000759345.1:WP_052384206.1 (256 amino acids)
SeqID: WP_052384206.1 NCBI__GCF_000759345.1:WP_052384206.1 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Unknown [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- Periplasmic [matched PS01039: SBP_BACTERIAL_3 Pattern - Periplasmic] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Periplasmic [matched 84028140: Cystine-binding periplasmic protein precursor] SCL-BLASTe- Unknown [No matches against database] Signal- Non-Cytoplasmic [Signal peptide detected] Localization Scores: Periplasmic 10.00 Extracellular 0.00 OuterMembrane 0.00 CytoplasmicMembrane 0.00 Cytoplasmic 0.00 Final Prediction: Periplasmic 10.00 -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict transmembrane helices and signal peptides: Phobius
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>WP_052384206.1 NCBI__GCF_000759345.1:WP_052384206.1 MKQAILKTVGMTALAFTFTTAAADPLKIGISAEPYPPFTFKGSDGSWTGFEVELGQALCE KMQAECEITPTGWSGIFAALDSGKIDMIMNSLSITEQRKEVIDFTDPYYFTPSAYVAAKS DSFDIPEGLDGKLLGVQGGTTNATYARRELRDTGVEIKIYDQQEQANRDLFAGRVDAILA DKVAMTELVERDEASEYEIRATAPRHAAFGEGVGIGLRQSDDDLRQRLNQAISEALEDGT CTDLSQEYFGTDICGS
Lawrence Berkeley National Laboratory