PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_054029547.1 NCBI__GCF_001293685.1:WP_054029547.1 (907 amino acids)

SeqID: WP_054029547.1 NCBI__GCF_001293685.1:WP_054029547.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597078: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_054029547.1 NCBI__GCF_001293685.1:WP_054029547.1
MMKRTLHVNGVPRTVIVEADQSLANVLREQLGLTGTKIGCGQAQCGCCNVILDDKLVRSC
VTKMSKVADGSTVITVEGIGNRDNLHPIQLSWIVHGGAQCGFCTPGFIVSVKALLDQNPN
PTREDVREWFQTHRNACRCTGYKQLVDAVMDAAKVMRGEMKAEDLLFRIPPDGHIWGTNH
PRPSAVAKVTGTLDYGADLGLKMPADTLYLALVQAKVSHANIKGIDTSEAEKMPGVFKVV
TAKDVTGKNRITGLITFPTNKGDGWDRPILCDQKVFQYGDAIAIVCADNEYQARRAAEKV
KVDLEELPAYMSAPAAMAEDAMEIHPGTPNVYFELPVVKGGETAPLMQSAAYTAEGDYYL
QRQPHLTMETDVGCAYFDDEERLTIHSKSIAIHLHSAMIAAGVGISPNKLRLVQNPAGGT
FGYKFSPTMEALLGVACMATGRPVFLRYDYQQHITYTGKRSPFWMKVKYGADKEGKIVAM
ESDWSVDHGPYSEFGDLLTLRGAQFIGAGYGIPNIRGMGRTVCTNHAWGSAFRAYGSPQS
FLASESLIDELAEKMGIDPLELRARNVYRPGDTTPTGQVPEVFCFQEMIEKLRPIYTSAL
EKAGQNSTADVKRGVGISLGIYGCGLDGADSSEIRVALNPDNTITVFSSWEDHGQGADMG
ALGTAHKAFEPMGVQPDRIRLVMNDTAITPNSGPAGGSRSQVVTGNAIKNGCEMLMAAMR
KPDGTYRTFAEMEAENLPVSYSGQWTASMCTNCDLKTSQGEPFSVYMYGMFMAEVAVETA
TGKTTVEGFTAISDVGSINNKLVVDGQMYGGIAQGIGLALSEDFEDLSKHNNLRACGLPY
AKMIPDKMDLHYIESPRENGPFGAAGVGELPLTSSHVAVINAIHNACGVRIRHLPALPEK
VLAALKK