PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_054342411.1 NCBI__GCF_001305295.1:WP_054342411.1 (869 amino acids)

SeqID: WP_054342411.1 NCBI__GCF_001305295.1:WP_054342411.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2506131: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_054342411.1 NCBI__GCF_001305295.1:WP_054342411.1
MNTEYRKSLPGTKLDYFDTRAAIEDIQPGSYAKLPYTSRVLAEQLVRRCEPEALTDSLKQ
LIEFKRELDFPWYPARVVCHDILGQTALVDLAGLRDAIAEQGGDPSKVNPVVPTQLIVDH
SLAVEAAGFDPDAFEKNRAIEDRRNDDRFHFIEWCKTAFDNVDVIPAGNGIMHQINLEKM
SPVIQARDGVAYPDTCVGTDSHTPHVDALGVLAIGVGGLEAETVMLGLPSMMRLPDIIGV
KLTGKRQPGITATDIVLAITEFLRNQKVVSAYLEFFGEGAKNLTIGDRATISNMTPEFGA
SAGMFYIDEQTIAYLKLTGREPEQVALVEQYAKLTGLWADDLENVEYERVLEFDLSSVVR
NMAGPSNPHRRLPTSALKERGIASEEMLAAAKAEEEAGLMPDGAVIIAAITSCTNTSNPR
NVVAAGLVAKKANELGLVRKPWVKTSFAPGSKVAKLYLEEAGLLSEMEQLGFGIVGYACT
TCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAG
TIRFDIEKDVLGTDKDGNPITLKDIWPSDEEIDSIVAKAVKPEQFSQIYIPMFDLGTVEK
AVSPLYDWRPQTTYIRRPPYWEGALAGERTMKGMRPLAVLGDNITTDHLSPSNAIQASSA
AGEYCAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLLNEMCLDEKGEVKQGSLARIEP
EGKESRMWEAIETYMERKQPLIIVAGADYGQGSSRDWAAKGVRLAGVEAIMAEGFERIHR
TNLVGMGVLPLQFKEGETRKTYAIDGTETFDVEGDISPRAELNVIINRANGETVKVPMIC
RLDTAAEVNVYNAGGVLQRFAQDFLEGNA