PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_054656330.1 NCBI__GCF_002217945.1:WP_054656330.1 (517 amino acids)

SeqID: WP_054656330.1 NCBI__GCF_002217945.1:WP_054656330.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118589: NADH dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Extracellular          0.01
    Periplasmic            0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_054656330.1 NCBI__GCF_002217945.1:WP_054656330.1
MLDNKLKQQLSSYLQLLQQPVVFTLDTGDSANGTKVRDFLNEVVALSPKLSIAEGQLKRQ
PSFTVDAKGAAPSGITFAGIPLGHEFESFVLALLQVSGHAPKISAKVRQQIEAIDQDLHF
ETFASLSCHNCPDVVQALDIMSLLNPHITHTMIEGGMFQDEAEANNIMAVPTVFLNGKEW
HNGRATLEQLVNKAQGKAAVAAVDNDVSDQTYDVLIIGGGPAAGSAAVYAGRKGLSTAVV
ADHMGGQPLETVGIENLIGTDYIEGEQLMQNIQAQMTKYNVTLIDGQTVTGLTAGSPVQV
SLKGDTILKGRTVIIATGAHWRNVNVPGEAEFRNKGVAYCPHCDGPLYKGKNVAVIGGGN
SGVEAAIDLAGIAKHVSVLEFVPKISADAVLVSKAQSLANVDLITNAQTTAITGDGRVTG
MTYTDRATGDSKSLAVDGVFVQIGLVPNTDWLAECVDMNKHGEIVVDEKGATSMANVFAA
GDCTNSTYKQIIISMGSGATAALGAFDALAREVTVKA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory