PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_055437104.1 NCBI__GCF_001418085.1:WP_055437104.1 (970 amino acids)

SeqID: WP_055437104.1 NCBI__GCF_001418085.1:WP_055437104.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599966: probable ferredoxin[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_055437104.1 NCBI__GCF_001418085.1:WP_055437104.1
MSIKINNSVLVTLEKSLEGELHYSDLMKRLYATDASVYRMLPLAVAFPKSNSDIKKLVVF
ATKNKTSIIPRTAGTSLAGQCVGTGIVVDVSKYFTKILNINETNQTVTVQPGVVRDELNN
HLKPFGLFFGPNTSTSNRCMIGGMVGNNSSGTTSIRYGVTRDKVLELKTILSDGSEAVFS
ELTQEALQNKTKSNTLEGKIYSTVVSELSSEETRNEIINNFPKPEIHRRNTGYAIDELIN
TTEAFNLCKLLSGSEGTLAFTTEITLKLDKLPASQSIMIAAHFNTINACLEAVEPVMQHN
LFTCEMMDKTILDCTKNNKTQTENRQFIQGDPQAILMCEVKGETLENVQIQANNLIETLE
NTGLSYANISLVNKEIDKANELRKAGLGLLGNIIGDKKAVACIEDTAVALPDLANYISEF
TALMKGHKQGAVYYAHAGAGEIHLRPILNLKKDEDVILFRKITTDVATLVKKYNGSFSGE
HGDGIVRAEFIKFMIGDKNYQLLKRIKSVFDPENIFNPGKIVEAFPMDKNLRYQVDRVEP
KIETLLDFSASQGILREAEKCNGSGDCRKLPEFGGTMCPSYRATRDEKDTTRARANALRE
YLTNSDKANKFDHEELKQVFDLCLSCKACSSECPSSVDVATLKAEFQYQYQKVNGTNLRT
KLFAYNNKLNAIGSKLPSLTNFMFSNGFTSSILKKTIGVATERSLPLISSKSLYKEYQII
KNEIIKNKYIKTIYLFNDEFTNYLDTSIGVDAVTLLQALNYEVKLINNSESGRSFMSKGL
LDEAKKVANRNIEIYKNVISEETPLVGIEPSAILSFRGEYLKLVDDKVSAKAIAKNTFLI
EEFLSNEIAIGNIKPSQFTSEEKTIKFHGHCHQKAESNQIHSFNVLNLPKNYKVTIIPSG
CCGMAGSFGYEKEHYKVSMQIGEQTLFPAVRNASLETTIAANGTSCRHQIKDGTQRTALH
PITILKEALL