PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_057506705.1 NCBI__GCF_001431535.1:WP_057506705.1 (521 amino acids)

SeqID: WP_057506705.1 NCBI__GCF_001431535.1:WP_057506705.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598964: GMP synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_057506705.1 NCBI__GCF_001431535.1:WP_057506705.1
MTNIHTDKILILDFGAQYTQLIARRIRELGVYCEIWAWDHNPADIAGFGAKGIILSGGPE
STTLPGAPAAPQEVFDSGLPVFGICYGMQTLAAQLGGETEAADQREFGHAEVNIVAPDAL
FSGLSDHPGEAKLNVWMSHGDHVSKAPPGFTITATTDRIPVAAMANEDKRWYGVQFHPEV
THTLQGQALLRRFVVDVCGCETLWTAANIIEDQIARVREQVGDDDVILGLSGGVDSSVVA
ALLHKAIGDKLTCVFVDTGLLRWQEGDQVMAMFAEHMGVKVIRVNAADRYFAKLEGVSDP
EAKRKIIGNLFVDIFDEESNKLSNAKWLAQGTIYPDVIESAGSKTGKAHVIKSHHNVGGL
PEHMKLGLVEPLRELFKDEVRRLGVELGLPRSMVYRHPFPGPGLGVRILGEVKREYAELL
AKADAIFIEELRKADLYDKTSQAFAVFLPVKSVGVVGDARAYEWVIALRAVETIDFMTAH
WAHLPYEFLGTVSNRIINELRGVSRVVYDISGKPPATIEWE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory