PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_057506874.1 NCBI__GCF_001431535.1:WP_057506874.1 (583 amino acids)

SeqID: WP_057506874.1 NCBI__GCF_001431535.1:WP_057506874.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Cytoplasmic                   [matched PS50862: AA_TRNA_LIGASE_II Profile - Cytoplasmic ]
    SCL-BLAST-        Cytoplasmic                   [matched 81306564: Aspartyl-tRNA synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            10.00
    Periplasmic            0.00
    CytoplasmicMembrane    0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_057506874.1 NCBI__GCF_001431535.1:WP_057506874.1
MRTHFCGLVDETLIGQTVTLAGWTDVARNQGGVCFIDLRDHEGIVQVTVEVDNAEVFAVA
ASLGYEDVLQVEGVVRARHAVNDKMATGKVEVIATAITVLNKAAPLPFHAHENPGEETRL
KYRYLDLRRPEMQRMQRTRIKLVQALRRHLDERGFQDIETPILTKATPEGARDFLVPARM
HPGEFYALPQSPQLFKQILMVAGFDRYYQIARCFRDEALRADRQLEFTQLDMEFAFVREQ
DVQDFVEDMIRGIFKEVVDVELDARFPRMTWAEAMRRYGSDKPDLRIALELVDVAELVKS
SEFPVFTAAANDADGRVAALRIPGGATLSRKQIDEYAAHAAKYGAKGLAYIKVGENGEIS
SPIQKFFSEDGFAALLAHVGAGKGDIVFFGAGGYNKVSDFMGALRLKAGKDFGLVADGWA
PLWVTDFPMFEWDEEAQRYVALHHPFTAPAVDDIADLRTHAKTAVSRGYDMVLNGNEIGG
GSIRIHRPDMQSAVFELLGIDAEEARAKFGFLLDALNYGAPPHGGIAFGIDRIAALMAGT
ESIRDVIPFPKTTGAQCLMTDAPSPIADAQLAEVHIQVRPKKA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory