PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_057508189.1 NCBI__GCF_001431535.1:WP_057508189.1 (892 amino acids)

SeqID: WP_057508189.1 NCBI__GCF_001431535.1:WP_057508189.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141685: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_057508189.1 NCBI__GCF_001431535.1:WP_057508189.1
MNAPTLSPAAPGFTPPADALLSPELPASPSPFRQAITDAWLKDEATHVSELLAQARLPAD
EQAQVQALAADLVARVRVRAKDQGAIEAFMRQYDLGSEEGVLLMCVAEALLRIPDQDTAD
KLIRDKLADADWKKHMGGSDSVLVNASTWGLMLTGKLVQINDVTRADVPGAFKRLMGRVG
EPVIRLAVRQAMKIMGHQFVMGRTIGEALERSHKGDNASYRYSFDMLGEGALTMKDALRY
LEDYRRAIHAIGGDHKARGGRPEGDVNNAPGISIKLSALYPRYEHAKRARVLQDLVPGVL
ELAQLAKSYGIGCTVDAEEADRLELSLDIIDAVFSDASLAGWDGFGVVVQAYQKRTPYTI
DFLADMARRNGRRLQVRLVKGAYWDAEIKRAQIEGYPGYPVFTRKQNTDVSYLACAKRLF
GHSDAIYPMFATHNAHTIAAIRTIAKGGVYEHQKLHGMGDDLYAEVVPADRLGLPCRVYA
PVGSHEDLLPYLVRRLLENGANSSFVNRITDDRVAIAELVRDPVEMVSAFAAVSPSNIAH
PKIPLPVNLLRSQNHDRNNSMGINLANDNALRALAEQLNAAVKPWTAAPLVPGATVTGAS
LPVTNPADTRQVVGHWQAADAATVQKALANAVAAQPAWNRTPATSRAAILEHAADQLEAR
IAEFMALCVKEAGKSLPDGVAEVREAVDFLRYYAKQAREQFAHAEKLPSPTGESNELQLH
GRGVFVCISPWNFPLAIFLGQVAAALAAGNSVIAKPAEQTNLIGYYAVKLLLDAGVPEGV
LQFLPGDGATVGAALTADPRVAGVAFTGSTDTARAINRAMAARDAAIGVLIAETGGQNAF
IADSSALPEQLVKDAIGSAFTSAGQRCSAARVLFVQDDIADKVMTMLAGRGE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory